seq.hpp

 
#ifndef BTLLIB_SEQ_HPP
#define BTLLIB_SEQ_HPP
 
#include "btllib/status.hpp"
 
#include <string>
 
namespace btllib {
 
extern const char COMPLEMENTS[256];
extern const char AMINO_ACIDS[256];
extern const char CAPITALS[256];
extern const char CT_CONVERSION[256];
extern const char GA_CONVERSION[256];
 
void
reverse_complement(std::string& seq);
 
std::string
get_reverse_complement(const std::string& seq);
 
void
bs_conversion(std::string& seq, const std::string& type);
 
std::string
get_bs_conversion(const std::string& seq, const std::string& type);
 
}
 
// namespace btllib
 
#endif